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» Models and Methods in Comparative Genomics
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BMCBI
2007
139views more  BMCBI 2007»
15 years 4 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
RECOMB
2004
Springer
16 years 4 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand
115
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AI
2009
Springer
15 years 10 months ago
Training Global Linear Models for Chinese Word Segmentation
This paper examines how one can obtain state of the art Chinese word segmentation using global linear models. We provide experimental comparisons that give a detailed road-map for ...
Dong Song, Anoop Sarkar
BMCBI
2010
110views more  BMCBI 2010»
15 years 4 months ago
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes
Background: The binding of peptide fragments of antigens to class II MHC is a crucial step in initiating a helper T cell immune response. The identification of such peptide epitop...
Andrew J. Bordner, Hans D. Mittelmann
BIOINFORMATICS
2005
151views more  BIOINFORMATICS 2005»
15 years 3 months ago
Differential and trajectory methods for time course gene expression data
Motivation: The issue of high dimensionality in microarray data has been, and remains, a hot topic in statistical and computational analysis. Efficient gene filtering and differen...
Yulan Liang, Bamidele Tayo, Xueya Cai, Arpad Kelem...