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» Models and Methods in Comparative Genomics
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114
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CIBCB
2006
IEEE
15 years 10 months ago
E2D: A Novel Tool for Annotating Protein Domains in Expressed Sequence Tags
The vast number of expressed sequence tags (ESTs) in public databases provides an important resource for comparative and functional genomics. A variety of methods based on homology...
Guo-Hsing Lee, Nai-Yu Chuang, Wen-Dar Lin, Chung-D...
WABI
2001
Springer
162views Bioinformatics» more  WABI 2001»
15 years 8 months ago
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
Yoseph Barash, Gill Bejerano, Nir Friedman
134
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CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
15 years 7 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
IPM
2006
64views more  IPM 2006»
15 years 3 months ago
Text mining without document context
We consider a challenging clustering task: the clustering of muti-word terms without document co-occurrence information in order to form coherent groups of topics. For this task, ...
Eric SanJuan, Fidelia Ibekwe-Sanjuan
IJFCS
2008
49views more  IJFCS 2008»
15 years 3 months ago
A Markovian Approach for the Analysis of the gene Structure
Hidden Markov models (HMMs) are effective tools to detect series of statistically homogeneous structures, but they are not well suited to analyse complex structures. Numerous meth...
Christelle Melo de Lima, Laurent Gueguen, Christia...