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RECOMB
2002
Springer
16 years 4 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 9 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
BMCBI
2007
132views more  BMCBI 2007»
15 years 4 months ago
Analysis of probe level patterns in Affymetrix microarray data
Background: Microarrays have been used extensively to analyze the expression profiles for thousands of genes in parallel. Most of the widely used methods for analyzing Affymetrix ...
Alexander C. Cambon, Abdelnaby Khalyfa, Nigel G. F...
ACL
2003
15 years 5 months ago
Self-Organizing Markov Models and Their Application to Part-of-Speech Tagging
This paper presents a method to develop a class of variable memory Markov models that have higher memory capacity than traditional (uniform memory) Markov models. The structure of...
Jin-Dong Kim, Hae-Chang Rim, Jun-ichi Tsujii
APWEB
2006
Springer
15 years 8 months ago
Building Content Clusters Based on Modelling Page Pairs
We give a new view on building content clusters from page pair models. We measure the heuristic importance within every two pages by computing the distance of their accessed positi...
Christoph Meinel, Long Wang 0002