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» Models and Methods in Comparative Genomics
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BMCBI
2006
100views more  BMCBI 2006»
15 years 4 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
FORTE
2010
15 years 5 months ago
On Efficient Models for Model Checking Message-Passing Distributed Protocols
Abstract. The complexity of distributed algorithms, such as state machine replication, motivates the use of formal methods to assist correctness verification. The design of the for...
Péter Bokor, Marco Serafini, Neeraj Suri
ALT
2003
Springer
16 years 1 months ago
Kernel Trick Embedded Gaussian Mixture Model
In this paper, we present a kernel trick embedded Gaussian Mixture Model (GMM), called kernel GMM. The basic idea is to embed kernel trick into EM algorithm and deduce a parameter ...
Jingdong Wang, Jianguo Lee, Changshui Zhang
CCE
2007
15 years 4 months ago
Adaptive optimisation of noisy black-box functions inherent in microscopic models
For systems where exact constitutive relations are unknown, a microscopic level description can be alternatively used. As microscopic simulations are computationally expensive, th...
Eddie Davis, Marianthi G. Ierapetritou
SIMULATION
2011
14 years 11 months ago
The Activity-tracking paradigm in discrete-event modeling and simulation: The case of spatially continuous distributed systems
From a modelling and simulation perspective, studying dynamic systems consists of focusing on changes in states. According to the precision of state changes, generic algorithms ca...
Alexandre Muzy, Rajanikanth Jammalamadaka, Bernard...