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» Models and Methods in Comparative Genomics
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CORR
2006
Springer
104views Education» more  CORR 2006»
15 years 4 months ago
Loop corrections for approximate inference
We propose a method to improve approximate inference methods by correcting for the influence of loops in the graphical model. The method is a generalization and alternative implem...
Joris M. Mooij, Bert Kappen
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
16 years 4 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
RECOMB
2010
Springer
15 years 6 months ago
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning
In this work we consider an inference task that biologists are very good at: deciphering biological processes by bringing together knowledge that has been obtained by experiments u...
Christian Widmer, Jose Leiva, Yasemin Altun, Gunna...
IJIT
2004
15 years 5 months ago
Computing Entropy for Ortholog Detection
Abstract-- Biological sequences from different species are called orthologs if they evolved from a sequence of a common ancestor species and they have the same biological function....
Hsing-Kuo Pao, John Case
BMCBI
2007
97views more  BMCBI 2007»
15 years 4 months ago
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Background: Microarray co-expression signatures are an important tool for studying gene function and relations between genes. In addition to genuine biological co-expression, corr...
Tineke Casneuf, Yves Van de Peer, Wolfgang Huber