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» Models and Methods in Comparative Genomics
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BMCBI
2004
150views more  BMCBI 2004»
15 years 4 months ago
Graph-based iterative Group Analysis enhances microarray interpretation
Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
Rainer Breitling, Anna Amtmann, Pawel Herzyk
162
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BMCBI
2004
120views more  BMCBI 2004»
15 years 4 months ago
pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files
Background: Carbohydrates are involved in a variety of fundamental biological processes and pathological situations. They therefore have a large pharmaceutical and diagnostic pote...
Thomas Lütteke, Claus-Wilhelm von der Lieth
BMCBI
2011
14 years 8 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
WSC
1998
15 years 6 months ago
An Object-Oriented Environment for Fast Simulation Using Compiler Techniques
In this paper, an efficient simulation environment that utilizes compiler techniques to speed up simulation is presented. The method is based on the utilization of flexible, proce...
Yiqing Huang, Ravishankar K. Iyer
VLDB
2005
ACM
139views Database» more  VLDB 2005»
15 years 10 months ago
Tree-Pattern Queries on a Lightweight XML Processor
Popular XML languages, like XPath, use “treepattern” queries to select nodes based on their structural characteristics. While many processing methods have already been propose...
Mirella Moura Moro, Zografoula Vagena, Vassilis J....