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BMCBI
2010
149views more  BMCBI 2010»
14 years 9 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
MMAS
2010
Springer
14 years 4 months ago
Simplified Modelling of a Thermal Bath, with Application to a Fluid Vortex System
Based on the thermodynamic concept of a reservoir, we investigate a computational model for interaction with unresolved degrees of freedom (a thermal bath). We assume that a finite...
Svetlana Dubinkina, Jason Frank, Ben Leimkuhler
IFIP
1998
Springer
15 years 1 months ago
Combining Static Partitioning with Dynamic Distribution of Threads
This paper presents a hybrid approach to automatic parallelization of computer programs which combines static extraction of threads (tasks) with dynamic scheduling for parallel an...
Ronald Moore, Melanie Klang, Bernd Klauer, Klaus W...
PERCOM
2006
ACM
15 years 9 months ago
Adaptive Medical Feature Extraction for Resource Constrained Distributed Embedded Systems
Tiny embedded systems have not been an ideal outfit for high performance computing due to their constrained resources. Limitations in processing power, battery life, communication ...
Roozbeh Jafari, Hyduke Noshadi, Majid Sarrafzadeh,...
ICCS
2007
Springer
15 years 3 months ago
Equivalent Semantic Translation from Parallel DEVS Models to Time Automata
Dynamic reconfigurable simulation based on Discrete Event System Specification (DEVS) requires efficient verification of simulation models. Traditional verification method of DEVS ...
Shoupeng Han, Kedi Huang