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EUROGP
2004
Springer
15 years 4 months ago
Constrained Molecular Dynamics as a Search and Optimization Tool
Abstract. In this paper we consider a new class of search and optimization algorithms inspired by molecular dynamics simulations in physics.
Riccardo Poli, Christopher R. Stephens
JSC
2007
77views more  JSC 2007»
14 years 11 months ago
Mathscape and molecular integrals
Abstract: This note describes the current reimplementation of mathscape that supports all the calculations in my paper ”Mathscapeand Molecular Integrals”.
Michael P. Barnett
ICCABS
2011
14 years 3 months ago
Towards accelerating molecular modeling via multi-scale approximation on a GPU
—Research efforts to analyze biomolecular properties contribute towards our understanding of biomolecular function. Calculating non-bonded forces (or in our case, electrostatic s...
Mayank Daga, Wu-chun Feng, Thomas Scogland
SIAMSC
2011
113views more  SIAMSC 2011»
14 years 5 months ago
An Efficient Higher-Order Fast Multipole Boundary Element Solution for Poisson-Boltzmann-Based Molecular Electrostatics
In order to compute polarization energy of biomolecules, we describe a boundary element approach to solving the linearized Poisson–Boltzmann equation. Our approach combines sever...
Chandrajit L. Bajaj, Shun-Chuan Albert Chen, Alexa...
JCC
2006
67views more  JCC 2006»
14 years 11 months ago
Heuristic molecular lipophilicity potential (HMLP): Lipophilicity and hydrophilicity of amino acid side chains
: Heuristic molecular lipophilicity potential (HMLP) is applied in the study of lipophilicity and hydrphilcity of 20 natural amino acids side chains. The HMLP parameters, surface a...
Qishi Du, Da-Peng Li, Wen-Zhang He, Kuo-Chen Chou