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111
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BMCBI
2006
111views more  BMCBI 2006»
15 years 21 days ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
133
Voted
BMCBI
2011
14 years 7 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
CCE
2008
15 years 23 days ago
Prediction of secondary structures of proteins using a two-stage method
Protein structure determination and prediction has been a focal research subject in life sciences due to the importance of protein structure in understanding the biological and ch...
Fadime Üney Yüksektepe, Özlem Yilma...
120
Voted
CMSB
2003
Springer
15 years 5 months ago
An Overview of Data Models for the Analysis of Biochemical Pathways
Biochemical pathways such as metabolic, regulatory or signal tranduction pathways can be viewed as interconnected processes forming an intricate network of functional and physical...
Yves Deville, David Gilbert, Jacques van Helden, S...
91
Voted
ICCS
2005
Springer
15 years 6 months ago
Towards Dynamic Data-Driven Optimization of Oil Well Placement
The adequate location of wells in oil and environmental applications has a significant economical impact on reservoir management. However, the determination of optimal well locatio...
Manish Parashar, Vincent Matossian, Wolfgang Bange...