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NC
2008
122views Neural Networks» more  NC 2008»
14 years 10 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...
ASMTA
2008
Springer
167views Mathematics» more  ASMTA 2008»
15 years 1 days ago
Perfect Simulation of Stochastic Automata Networks
The solution of continuous and discrete-time Markovian models is still challenging mainly when we model large complex systems, for example, to obtain performance indexes of paralle...
Paulo Fernandes, Jean-Marc Vincent, Thais Webber
SPRINGSIM
2007
14 years 11 months ago
Modeling and analysis of worm defense using stochastic activity networks
— Stochastic activity networks (SANs) are a widely used formalism for describing complex systems that have random behavior. Sophisticated software tools exist for the modeling an...
David M. Nicol, Steve Hanna, Frank Stratton, Willi...
BMCBI
2010
149views more  BMCBI 2010»
14 years 10 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
IRREGULAR
1997
Springer
15 years 2 months ago
Parallel Shared-Memory State-Space Exploration in Stochastic Modeling
Stochastic modeling forms the basis for analysis in many areas, including biological and economic systems, as well as the performance and reliability modeling of computers and comm...
Susann C. Allmaier, Graham Horton