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RECOMB
2005
Springer
15 years 10 months ago
Rapid Protein Side-Chain Packing via Tree Decomposition
This paper proposes a novel tree decomposition based side-chain assignment algorithm, which can obtain the globally optimal solution of the side-chain packing problem very efficien...
Jinbo Xu
RECOMB
2005
Springer
15 years 10 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
80
Voted
STOC
2003
ACM
188views Algorithms» more  STOC 2003»
15 years 10 months ago
Almost random graphs with simple hash functions
We describe a simple randomized construction for generating pairs of hash functions h1, h2 from a universe U to ranges V = [m] = {0, 1, . . . , m - 1} and W = [m] so that for ever...
Martin Dietzfelbinger, Philipp Woelfel
SIGMOD
2004
ACM
189views Database» more  SIGMOD 2004»
15 years 9 months ago
A Holistic Paradigm for Large Scale Schema Matching
Schema matching is a critical problem for integrating heterogeneous information sources. Traditionally, the problem of matching multiple schemas has essentially relied on finding ...
Bin He, Kevin Chen-Chuan Chang
PODS
2005
ACM
211views Database» more  PODS 2005»
15 years 9 months ago
Join-distinct aggregate estimation over update streams
There is growing interest in algorithms for processing and querying continuous data streams (i.e., data that is seen only once in a fixed order) with limited memory resources. Pro...
Sumit Ganguly, Minos N. Garofalakis, Amit Kumar, R...