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BMCBI
2010
118views more  BMCBI 2010»
14 years 9 months ago
Walk-weighted subsequence kernels for protein-protein interaction extraction
Background: The construction of interaction networks between proteins is central to understanding the underlying biological processes. However, since many useful relations are exc...
Seonho Kim, Juntae Yoon, Jihoon Yang, Seog Park
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BMCBI
2008
170views more  BMCBI 2008»
14 years 9 months ago
A genetic approach for building different alphabets for peptide and protein classification
Background: In this paper, it is proposed an optimization approach for producing reduced alphabets for peptide classification, using a Genetic Algorithm. The classification task i...
Loris Nanni, Alessandra Lumini
BMCBI
2008
164views more  BMCBI 2008»
14 years 9 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
CCR
2008
118views more  CCR 2008»
14 years 9 months ago
A generic language for application-specific flow sampling
Flow records gathered by routers provide valuable coarse-granularity traffic information for several measurement-related network applications. However, due to high volumes of traf...
Harsha V. Madhyastha, Balachander Krishnamurthy
BMCBI
2006
159views more  BMCBI 2006»
14 years 9 months ago
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures
Background: The structure of proteins may change as a result of the inherent flexibility of some protein regions. We develop and explore probabilistic machine learning methods for...
Mikael Bodén, Zheng Yuan, Timothy L. Bailey