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» Multi-concept Alignment and Evaluation
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BMCBI
2005
115views more  BMCBI 2005»
14 years 9 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
BMCBI
2004
141views more  BMCBI 2004»
14 years 9 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin
RECOMB
2003
Springer
15 years 10 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
COLING
2010
14 years 4 months ago
Notes on the Evaluation of Dependency Parsers Obtained Through Cross-Lingual Projection
In this paper we address methodological issues in the evaluation of a projectionbased framework for dependency parsing in which annotations for a source language are transfered to...
Kathrin Spreyer
ACL
2004
14 years 11 months ago
Experiments in parallel-text based grammar induction
This paper discusses the use of statistical word alignment over multiple parallel texts for the identification of string spans that cannot be constituents in one of the languages....
Jonas Kuhn