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» Multi-concept Alignment and Evaluation
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IPPS
2003
IEEE
15 years 2 months ago
Using Hybrid Alignment for Iterative Sequence Database Searches
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...
Yuheng Li, Mario Lauria, Ralf Bundschuh
LREC
2008
90views Education» more  LREC 2008»
14 years 11 months ago
Word Alignment Annotation in a Japanese-Chinese Parallel Corpus
Parallel corpora are critical resources for machine translation research and development since parallel corpora contain translation equivalences of various granularities. Manual a...
Yujie Zhang, Zhulong Wang, Kiyotaka Uchimoto, Qing...
BMCBI
2006
134views more  BMCBI 2006»
14 years 9 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...
RECOMB
2009
Springer
15 years 10 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
15 years 4 months ago
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties
—We present a new algorithm, ChemAlign, that uses physicochemical properties and secondary structure elements to create biologically relevant multiple sequence alignments (MSAs)....
Hyrum Carroll, Mark J. Clement, Quinn Snell, David...