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ICSM
2007
IEEE
15 years 10 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
VLDB
2002
ACM
161views Database» more  VLDB 2002»
15 years 3 months ago
Distributed Search over the Hidden Web: Hierarchical Database Sampling and Selection
Many valuable text databases on the web have non-crawlable contents that are "hidden" behind search interfaces. Metasearchers are helpful tools for searching over many s...
Panagiotis G. Ipeirotis, Luis Gravano
BMCBI
2010
140views more  BMCBI 2010»
15 years 1 months ago
An improved machine learning protocol for the identification of correct Sequest search results
Background: Mass spectrometry has become a standard method by which the proteomic profile of cell or tissue samples is characterized. To fully take advantage of tandem mass spectr...
Morten Kallberg, Hui Lu
SIGMOD
2006
ACM
232views Database» more  SIGMOD 2006»
16 years 4 months ago
To search or to crawl?: towards a query optimizer for text-centric tasks
Text is ubiquitous and, not surprisingly, many important applications rely on textual data for a variety of tasks. As a notable example, information extraction applications derive...
Panagiotis G. Ipeirotis, Eugene Agichtein, Pranay ...
FOCS
2006
IEEE
15 years 10 months ago
On the Quantum Query Complexity of Local Search in Two and Three Dimensions
The quantum query complexity of searching for local optima has been a subject of much interest in the recent literature. For the d-dimensional grid graphs, the complexity has been...
Xiaoming Sun, Andrew Chi-Chih Yao