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BMCBI
2008
122views more  BMCBI 2008»
14 years 11 months ago
Determining gene expression on a single pair of microarrays
Background: In microarray experiments the numbers of replicates are often limited due to factors such as cost, availability of sample or poor hybridization. There are currently fe...
Robert W. Reid, Anthony A. Fodor
IJSI
2008
115views more  IJSI 2008»
14 years 11 months ago
Towards Knowledge Acquisition from Semi-Structured Content
Abstract A rich family of generic Information Extraction (IE) techniques have been developed by researchers nowadays. This paper proposes WebKER, a system for automatically extract...
Xi Bai, Jigui Sun, Haiyan Che, Lian Shi
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
15 years 3 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
BMCBI
2010
147views more  BMCBI 2010»
14 years 11 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly
BMCBI
2006
180views more  BMCBI 2006»
14 years 11 months ago
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Background: Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these tools typically excels at one type of an...
Paul T. Shannon, David J. Reiss, Richard Bonneau, ...