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» Multicriteria Network Design Using Evolutionary Algorithm
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BMCBI
2007
233views more  BMCBI 2007»
15 years 3 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2011
14 years 6 months ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
GECCO
2007
Springer
131views Optimization» more  GECCO 2007»
15 years 9 months ago
Using feedback to regulate gene expression in a developmental control architecture
We present what we believe is the first attempt to physically reconstruct the exploratory mechanism of genetic regulatory networks. Feedback plays a crucial role during developme...
Kester Clegg, Susan Stepney, Tim Clarke
JUCS
2007
150views more  JUCS 2007»
15 years 2 months ago
Co-evolution for Communication: An EHW Approach
: Evolvable Hardware (EHW) is a new concept that aims the application of evolutionary algorithms to hardware design. EHW can adapt itself to unknown environment based on features o...
Yasser Baleghi Damavandi, Karim Mohammadi
JNW
2006
98views more  JNW 2006»
15 years 2 months ago
Efficient Distributed Algorithm for RWA Using Path Protection
A number of Integer Linear Program (ILP) formulations for both static and dynamic lightpath allocation have been proposed, for the design of survivable WDM networks. However, such ...
Arunita Jaekel, Ying Chen