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JPDC
2007
167views more  JPDC 2007»
15 years 4 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
KDD
1998
ACM
190views Data Mining» more  KDD 1998»
15 years 8 months ago
Time Series Forecasting from High-Dimensional Data with Multiple Adaptive Layers
This paper describes our work in learning online models that forecast real-valued variables in a high-dimensional space. A 3GB database was collected by sampling 421 real-valued s...
R. Bharat Rao, Scott Rickard, Frans Coetzee
BMCBI
2008
78views more  BMCBI 2008»
15 years 4 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
154
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TIP
2011
217views more  TIP 2011»
14 years 11 months ago
Contextual Object Localization With Multiple Kernel Nearest Neighbor
—Recently, many object localization models have shown that incorporating contextual cues can greatly improve accuracy over using appearance features alone. Therefore, many of the...
Brian McFee, Carolina Galleguillos, Gert R. G. Lan...
BMCBI
2011
14 years 8 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...