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» Multiple Pattern Matching in LZW Compressed Text
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FUIN
2006
98views more  FUIN 2006»
14 years 9 months ago
On-line Approximate String Matching in Natural Language
We consider approximate pattern matching in natural language text. We use the words of the text as the alphabet, instead of the characters as in traditional string matching approac...
Kimmo Fredriksson
FUN
2010
Springer
312views Algorithms» more  FUN 2010»
15 years 2 months ago
On Table Arrangements, Scrabble Freaks, and Jumbled Pattern Matching
Given a string s, the Parikh vector of s, denoted p(s), counts the multiplicity of each character in s. Searching for a match of Parikh vector q (a “jumbled string”) in the tex...
Peter Burcsi, Ferdinando Cicalese, Gabriele Fici, ...
WEA
2004
Springer
150views Algorithms» more  WEA 2004»
15 years 2 months ago
Increased Bit-Parallelism for Approximate String Matching
Abstract. Bit-parallelism permits executing several operations simultaneously over a set of bits or numbers stored in a single computer word. This technique permits searching for t...
Heikki Hyyrö, Kimmo Fredriksson, Gonzalo Nava...
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
15 years 4 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
FPL
2003
Springer
164views Hardware» more  FPL 2003»
15 years 2 months ago
Fast, Large-Scale String Match for a 10Gbps FPGA-Based Network Intrusion Detection System
Intrusion Detection Systems such as Snort scan incoming packets for evidence of security threats. The most computation-intensive part of these systems is a text search against hund...
Ioannis Sourdis, Dionisios N. Pnevmatikatos