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» Multiple Sequence Alignment Using Reconfigurable Computing
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EMNLP
2009
14 years 7 months ago
Graphical Models over Multiple Strings
We study graphical modeling in the case of stringvalued random variables. Whereas a weighted finite-state transducer can model the probabilistic relationship between two strings, ...
Markus Dreyer, Jason Eisner
IPPS
2005
IEEE
15 years 3 months ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
BMCBI
2008
150views more  BMCBI 2008»
14 years 10 months ago
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Background: The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been...
Hélène Chiapello, Annie Gendrault, C...
BICOB
2010
Springer
14 years 7 months ago
Multiple Kernel Learning for Fold Recognition
Fold recognition is a key problem in computational biology that involves classifying protein sharing structural similarities into classes commonly known as "folds". Rece...
Huzefa Rangwala
CIBCB
2005
IEEE
15 years 3 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang