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» Multiple Sequence Alignment Using Reconfigurable Computing
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BMCBI
2011
14 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
CIKM
2008
Springer
14 years 11 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
BMCBI
2004
200views more  BMCBI 2004»
14 years 9 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
NAACL
2003
14 years 11 months ago
Learning to Paraphrase: An Unsupervised Approach Using Multiple-Sequence Alignment
We address the text-to-text generation problem of sentence-level paraphrasing — a phenomenon distinct from and more difficult than word- or phrase-level paraphrasing. Our appro...
Regina Barzilay, Lillian Lee