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» Multiple Sequence Alignment Using Reconfigurable Computing
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84
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ECCB
2008
IEEE
15 years 4 months ago
Segment-based multiple sequence alignment
Tobias Rausch, Anne-Katrin Emde, David Weese, Andr...
HPDC
2010
IEEE
14 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
IPPS
2006
IEEE
15 years 3 months ago
ReConfigME: a detailed implementation of an operating system for reconfigurable computing
Reconfigurable computing applications have traditionally had the exclusive use of the field programmable gate array, primarily because the logic densities of the available devices...
Grant B. Wigley, David A. Kearney, Mark Jasiunas
92
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BMCBI
2010
189views more  BMCBI 2010»
14 years 9 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
BMCBI
2008
211views more  BMCBI 2008»
14 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle