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» Multiple Sequence Alignment Using Reconfigurable Computing
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104
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CISIS
2010
IEEE
15 years 9 months ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...
140
Voted
PRL
2011
14 years 9 months ago
Temporal synchronization of non-overlapping videos using known object motion
This paper presents a robust technique for temporally aligning multiple video sequences that have no spatial overlap between their fields of view. It is assumed that (i) a moving...
Darlan N. Brito, Flávio L. C. Pádua,...
NAR
2010
140views more  NAR 2010»
14 years 9 months ago
GUIDANCE: a web server for assessing alignment confidence scores
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE ...
Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy La...
110
Voted
AINA
2008
IEEE
15 years 8 months ago
Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
Che-Lun Hung, Chun-Yuan Lin, Yeh-Ching Chung, Chua...
CF
2008
ACM
15 years 4 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...