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» Multiple Sequence Alignment Using Reconfigurable Computing
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BIOCOMP
2006
15 years 3 months ago
PAC: Progressive Alignment with Consensus Sequences
Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
Ke Liu, Mansur H. Samadzadeh
WOB
2004
120views Bioinformatics» more  WOB 2004»
15 years 3 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
RECOMB
2012
Springer
13 years 4 months ago
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
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ICPP
1995
IEEE
15 years 5 months ago
Parallel Multiple Sequence Alignment Using Speculative Computation
Tieng K. Yap, Peter J. Munson, Ophir Frieder, Robe...
BMCBI
2010
198views more  BMCBI 2010»
15 years 1 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo