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    » Multiple Sequence Alignment Using Reconfigurable Computing
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    CLEF
    2009
    Springer
    128views Information Technology» more  CLEF 2009»
    Morphological Analysis by Multiple Sequence Alignment
    14 years 10 months ago
    Morphological Analysis by Multiple Sequence Alignment
    Download  www.cslu.ogi.edu
    In biological sequence processing, Multiple Sequence Alignment (MSA) techniques capture information about long-distance dependencies and the three-dimensional structure of protein ...
    Tzvetan Tchoukalov, Christian Monson, Brian Roark
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    ISMB
    1996
    109views Computational Biology» more  ISMB 1996»
    Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
    14 years 11 months ago
    Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
    Download  www.aaai.org
    Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods. The hidden Markovmodel approach offers a new,flex...
    Marcella A. McClure, Chris Smith, Pete Elton
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    BMCBI
    2008
    123views more  BMCBI 2008»
    A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    14 years 9 months ago
    A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    Download  www.biomedcentral.com
    Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
    Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
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    BMCBI
    2008
    140views more  BMCBI 2008»
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    14 years 9 months ago
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    Download  www.biomedcentral.com
    Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
    Kazutaka Katoh, Hiroyuki Toh
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    ICASSP
    2008
    IEEE
    125views Signal Processing» more  ICASSP 2008»
    Probabilistic structural alignment of RNA sequences
    15 years 4 months ago
    Probabilistic structural alignment of RNA sequences
    Download  www.ece.rochester.edu
    We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
    Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
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