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» Multiple Sequence Alignment Using Reconfigurable Computing
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77
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BMCBI
2010
154views more  BMCBI 2010»
14 years 9 months ago
Fine-tuning structural RNA alignments in the twilight zone
Background: A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence alignment, and then fold the alignment, optimizing a score ...
Andreas Bremges, Stefanie Schirmer, Robert Giegeri...
BMCBI
2005
162views more  BMCBI 2005»
14 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ISMIR
2005
Springer
141views Music» more  ISMIR 2005»
15 years 3 months ago
Multiple Lyrics Alignment: Automatic Retrieval of Song Lyrics
We present an approach to automatically retrieve and extract lyrics of arbitrary songs from the Internet. It is intended to provide easy and convenient access to lyrics for users,...
Peter Knees, Markus Schedl, Gerhard Widmer
86
Voted
BMCBI
2006
92views more  BMCBI 2006»
14 years 9 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2005
100views more  BMCBI 2005»
14 years 9 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich