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» Multiple Sequence Alignment Using Reconfigurable Computing
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104
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IPPS
2006
IEEE
15 years 3 months ago
Exploiting processing locality through paging configurations in multitasked reconfigurable systems
FPGA chips in reconfigurable computer systems are used as malleable coprocessors where components of a hardware library of functions can be configured as needed. As the number of ...
T. Taher, Tarek A. El-Ghazawi
BMCBI
2006
117views more  BMCBI 2006»
14 years 9 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
15 years 3 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
ALMOB
2008
81views more  ALMOB 2008»
14 years 9 months ago
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Background: Sequence-based phylogeny reconstruction is a fundamental task in Bioinformatics. Practically all methods for phylogeny reconstruction are based on multiple alignments....
Holger Wagner, Burkhard Morgenstern, Andreas W. M....
97
Voted
GCB
2003
Springer
105views Biometrics» more  GCB 2003»
15 years 2 months ago
In silico prediction of UTR repeats using clustered EST data
Clustering of EST data is a method for the non-redundant representation of an organisms transcriptome. During clustering of large amounts of EST data, usually some large clusters ...
Stefan A. Rensing, Daniel Lang, Ralf Reski