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» Multiple Sequence Alignment Using Reconfigurable Computing
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ESWS
2009
Springer
14 years 7 months ago
Using Partial Reference Alignments to Align Ontologies
In different areas ontologies have been developed and many of these ontologies contain overlapping information. Often we would therefore want to be able to use multiple ontologies....
Patrick Lambrix, Qiang Liu 0002
BMCBI
2006
85views more  BMCBI 2006»
14 years 9 months ago
On single and multiple models of protein families for the detection of remote sequence relationships
Background: The detection of relationships between a protein sequence of unknown function and a sequence whose function has been characterised enables the transfer of functional a...
James A. Casbon, Mansoor A. S. Saqi
BMCBI
2004
125views more  BMCBI 2004»
14 years 9 months ago
A fast algorithm for determining the best combination of local alignments to a query sequence
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
Gavin C. Conant, Andreas Wagner
64
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ISMIR
2004
Springer
138views Music» more  ISMIR 2004»
15 years 3 months ago
MusicBLAST - Gapped Sequence Alignment for MIR
We propose an algorithm, MusicBLAST, for approximate pattern search/matching on symbolic musical data. MusicBLAST is based on the BLAST algorithm, one of the most commonly used al...
Jürgen Kilian, Holger H. Hoos
RECOMB
2002
Springer
15 years 10 months ago
Significance Of inter-species matches when evolutionary rate varies
We develop techniques to estimate the statistical significance of gap-free alignments between two genomic DNA sequences, using human-mouse alignments as an example. The sequences ...
Jia Li, Webb Miller