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» Multiple Sequence Alignment Using Reconfigurable Computing
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ICPADS
2005
IEEE
15 years 3 months ago
Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors
New biological experimental techniques are continuing to generate large amounts of data using DNA, RNA, human genome and protein sequences. The quantity and quality of data from t...
Xiandong Meng, Vipin Chaudhary
67
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RECOMB
2010
Springer
15 years 4 months ago
Alignment-Free Phylogenetic Reconstruction
We introduce the first polynomial-time phylogenetic reconstruction algorithm under a model of sequence evolution allowing insertions and deletions—or indels. Given appropriate ...
Constantinos Daskalakis, Sébastien Roch
3DIM
2005
IEEE
15 years 3 months ago
Fast Simultaneous Alignment of Multiple Range Images Using Index Images
This paper describes a fast, simultaneous alignment method for a large number of range images. Generally the most time-consuming task in aligning range images is searching corresp...
Takeshi Oishi, Atsushi Nakazawa, Ryo Kurazume, Kat...
BMCBI
2008
244views more  BMCBI 2008»
14 years 9 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
ICASSP
2011
IEEE
14 years 1 months ago
On visually evoked potentials in eeg induced by multiple pseudorandom binary sequences for brain computer interface design
Visually evoked potentials have attracted great attention in the last two decades for the purpose of brain computer interface design. Visually evoked P300 response is a major sign...
Hooman Nezamfar, Umut Orhan, Deniz Erdogmus, Kenne...