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» Multiple Sequence Alignment Using Reconfigurable Computing
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RECOMB
1997
Springer
15 years 1 months ago
Sequence alignment with tandem duplication
Algorithm development for comparing and aligning biological sequences has, until recently, been based on the SI model of mutational events which assumes that modi cation of sequen...
Gary Benson
73
Voted
IPPS
2006
IEEE
15 years 3 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan
66
Voted
FCCM
1997
IEEE
118views VLSI» more  FCCM 1997»
15 years 1 months ago
Computing kernels implemented with a wormhole RTR CCM
The Wormhole Run-Time Reconfiguration (RTR) computing paradigm is a method for creating high performance computational pipelines. The scalability, distributed control and data pow...
Ray Bittner, Peter M. Athanas
92
Voted
ICPADS
2006
IEEE
15 years 3 months ago
Scalable Hybrid Designs for Linear Algebra on Reconfigurable Computing Systems
—Recently, high-end reconfigurable computing systems that employ Field-Programmable Gate Arrays (FPGAs) as hardware accelerators for general-purpose processors have been built. T...
Ling Zhuo, Viktor K. Prasanna
DATE
2006
IEEE
101views Hardware» more  DATE 2006»
15 years 3 months ago
A parallel configuration model for reducing the run-time reconfiguration overhead
Multitasking on reconfigurable logic can achieve very high silicon reusability. However, configuration latency is a major limitation and it can largely degrade the system performa...
Yang Qu, Juha-Pekka Soininen, Jari Nurmi