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» Multiple Sequence Alignment Using Reconfigurable Computing
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AAAI
2004
14 years 11 months ago
Space-Efficient Memory-Based Heuristics
A memory-based heuristic is a heuristic function that is stored in a lookup table. Very accurate heuristics have been created by building very large lookup tables, sometimes calle...
Rong Zhou, Eric A. Hansen
89
Voted
ACL
2009
14 years 7 months ago
A Comparative Study of Hypothesis Alignment and its Improvement for Machine Translation System Combination
Recently confusion network decoding shows the best performance in combining outputs from multiple machine translation (MT) systems. However, overcoming different word orders prese...
Boxing Chen, Min Zhang, Haizhou Li, AiTi Aw
CSB
2002
IEEE
121views Bioinformatics» more  CSB 2002»
15 years 2 months ago
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome
There is a pressing need to align growing set of expressed sequence tags (ESTs) to newly sequenced human genome. The problem is, however, complicated by the exon/intron structure ...
Jun Ogasawara, Shinichi Morishita
91
Voted
BMCBI
2007
134views more  BMCBI 2007»
14 years 9 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
BMCBI
2008
149views more  BMCBI 2008»
14 years 9 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal