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» Multiple Sequence Alignment Using Reconfigurable Computing
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BMCBI
2005
137views more  BMCBI 2005»
14 years 9 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
TPDS
1998
112views more  TPDS 1998»
14 years 9 months ago
Parallel Computation in Biological Sequence Analysis
—A massive volume of biological sequence data is available in over 36 different databases worldwide, including the sequence data generated by the Human Genome project. These data...
Tieng K. Yap, Ophir Frieder, Robert L. Martino
84
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RECOMB
2007
Springer
15 years 10 months ago
Support Vector Training of Protein Alignment Models
Abstract. Sequence to structure alignment is an important step in homology modeling of protein structures. Incorporation of features like secondary structure, solvent accessibility...
Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Ja...
CVPR
2012
IEEE
13 years 3 days ago
Online robust image alignment via iterative convex optimization
In this paper we study the problem of online aligning a newly arrived image to previously well-aligned images. Inspired by recent advances in batch image alignment using low rank ...
Yi Wu, Bin Shen, Haibin Ling
BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...