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» Multiple Sequence Alignment Using Reconfigurable Computing
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ISMB
1996
14 years 11 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
RECOMB
2008
Springer
15 years 10 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
93
Voted
DATE
2010
IEEE
144views Hardware» more  DATE 2010»
15 years 2 months ago
A reconfigurable hardware for one bit transform based multiple reference frame Motion Estimation
—Motion Estimation (ME) is the most computationally intensive part of video compression and video enhancement systems. One bit transform (1BT) based ME algorithms have low comput...
Abdulkadir Akin, G. Sayilar, Ilker Hamzaoglu
WABI
2007
Springer
15 years 3 months ago
Topology Independent Protein Structural Alignment
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...
ACL
2009
14 years 7 months ago
Incremental HMM Alignment for MT System Combination
Inspired by the incremental TER alignment, we re-designed the Indirect HMM (IHMM) alignment, which is one of the best hypothesis alignment methods for conventional MT system combi...
Chi-Ho Li, Xiaodong He, Yupeng Liu, Ning Xi