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» Multiple Sequence Alignment Using Reconfigurable Computing
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FCCM
1999
IEEE
127views VLSI» more  FCCM 1999»
15 years 2 months ago
Mapping of an Automated Target Recognition Application from a Graphical Software Environment to FPGA-Based Reconfigurable Hardwa
A significant obstacle to the widespread adoption of FPGAbased configurable computing hardware has been the difficulty of mapping applications onto this hardware. We are developin...
Benjamin A. Levine, Senthil Natarajan, Chandra Tan...
CORR
2007
Springer
165views Education» more  CORR 2007»
14 years 9 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BIOCOMP
2007
14 years 11 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
BMCBI
2006
98views more  BMCBI 2006»
14 years 9 months ago
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements
Background: Many DNA regulatory elements occur as multiple instances within a target promoter. Gibbs sampling programs for finding DNA regulatory elements de novo can be prohibiti...
Kannan Tharakaraman, Leonardo Mariño-Ram&ia...
RECOMB
2005
Springer
15 years 10 months ago
Consensus Folding of Unaligned RNA Sequences Revisited
As one of the earliest problems in computational biology, RNA secondary structure prediction (sometimes referred to as "RNA folding") problem has attracted attention agai...
Vineet Bafna, Haixu Tang, Shaojie Zhang