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148
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BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
15 years 10 months ago
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties
—We present a new algorithm, ChemAlign, that uses physicochemical properties and secondary structure elements to create biologically relevant multiple sequence alignments (MSAs)....
Hyrum Carroll, Mark J. Clement, Quinn Snell, David...
146
Voted
STOC
2000
ACM
156views Algorithms» more  STOC 2000»
15 years 7 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
125
Voted
NAR
2006
128views more  NAR 2006»
15 years 3 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
90
Voted
BIOINFORMATICS
1999
82views more  BIOINFORMATICS 1999»
15 years 3 months ago
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
Julie Dawn Thompson, Frédéric Plewni...