Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...
This paper introduces a new similarity measure designed to bring a population of segmented subjects into alignment in a common coordinate system. Our metric aligns each subject wit...
Mathieu De Craene, Aloys du Bois d'Aische, Beno&ic...
The Automated Semantic Mapping of Ontologies with Validation (ASMOV) algorithm for ontology alignment was one of the top performing algorithms in the 2007 and 2008 Ontology Alignme...
Yves R. Jean-Mary, E. Patrick Shironoshita, Mansur...
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...