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BIOINFORMATICS
2007
74views more  BIOINFORMATICS 2007»
15 years 4 months ago
Simultaneous alignment and annotation of cis-regulatory regions
Genomic transcriptional processes rely heavily on the combinatorial binding of transcription factors on the upstream regions of genes. Analysis and complete characterization of su...
Abha Singh Bais, Steffen Grossmann, Martin Vingron
IJBRA
2006
111views more  IJBRA 2006»
15 years 4 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
TCBB
2008
138views more  TCBB 2008»
15 years 4 months ago
PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM
The subcellular locations of proteins are important functional annotations. An effective and reliable subcellular localization method is necessary for proteomics research. This pap...
Man-Wai Mak, Jian Guo, Sun-Yuan Kung
TIT
2008
171views more  TIT 2008»
15 years 4 months ago
Interference Alignment and Degrees of Freedom of the K-User Interference Channel
For the fully connected K user wireless interference channel where the channel coefficients are time-varying and are drawn from a continuous distribution, the sum capacity is chara...
Viveck R. Cadambe, Syed Ali Jafar
BMCBI
2004
91views more  BMCBI 2004»
15 years 4 months ago
Improved hit criteria for DNA local alignment
The hit criterion is a key component of heuristic local alignment algorithms. It specifies a class of patterns assumed to witness a potential similarity, and this choice is decisi...
Laurent Noé, Gregory Kucherov