Sciweavers

3877 search results - page 201 / 776
» Multiple alignment by aligning alignments
Sort
View
BMCBI
2007
136views more  BMCBI 2007»
15 years 4 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
JCB
2006
107views more  JCB 2006»
15 years 4 months ago
Protein Image Alignment via Piecewise Affine Transformations
Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
Florian A. Potra, Xing Liu, Françoise Seill...
JQL
2006
75views more  JQL 2006»
15 years 4 months ago
Improving calculations of the number of distinct alignments of two strings
In a recent work, M. Covington discusses the enumeration of two different sets of alignments of two strings of symbols using elementary combinatorial techniques. He defines two fu...
Øystein J. Rødseth, James A. Sellers
BMCBI
2002
108views more  BMCBI 2002»
15 years 4 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
ICASSP
2011
IEEE
14 years 8 months ago
Incorporating alignments into Conditional Random Fields for grapheme to phoneme conversion
Conditional Random Fields (CRFs) are a state-of-the-art approach to natural language processing tasks like grapheme-tophoneme (g2p) conversion which is used to produce pronunciati...
Patrick Lehnen, Stefan Hahn, Andreas Guta, Hermann...