Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
In a recent work, M. Covington discusses the enumeration of two different sets of alignments of two strings of symbols using elementary combinatorial techniques. He defines two fu...
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Conditional Random Fields (CRFs) are a state-of-the-art approach to natural language processing tasks like grapheme-tophoneme (g2p) conversion which is used to produce pronunciati...
Patrick Lehnen, Stefan Hahn, Andreas Guta, Hermann...