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» Multiple alignment by aligning alignments
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128
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BMCBI
2006
78views more  BMCBI 2006»
15 years 5 months ago
Subfamily logos: visualization of sequence deviations at alignment positions with high information content
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
Eric Beitz
165
Voted
JCB
2008
106views more  JCB 2008»
15 years 5 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
209
Voted
JUCS
2008
161views more  JUCS 2008»
15 years 5 months ago
A Model-Driven Approach to Align Business Processes with User Interfaces
: Information Technology (IT) has evolved over time from its traditional use as administrative support towards a more strategic role to enforce business processes (BP). But several...
Kênia Soares Sousa, Hildeberto Mendonç...
PAMI
2011
15 years 1 days ago
Approximately Global Optimization for Robust Alignment of Generalized Shapes
—In this paper, we introduce a novel method to solve shape alignment problems. We use gray-scale “images” to represent source shapes, and propose a novel two-component Gaussi...
Hongsheng Li, Tian Shen, Xiaolei Huang
NAR
2011
198views Computer Vision» more  NAR 2011»
14 years 8 months ago
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralo
The growing availability of complete genomic sequences from diverse species has brought about the need to scale up phylogenomic analyses, including the reconstruction of large col...
Jaime Huerta-Cepas, Salvador Capella-Gutiér...