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» Multiple alignment by aligning alignments
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146
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BMCBI
2008
123views more  BMCBI 2008»
15 years 3 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
120
Voted
CPHYSICS
2008
96views more  CPHYSICS 2008»
15 years 3 months ago
Moment distributions of clusters and molecules in the adiabatic rotor model
We present a Fortran program to compute the distribution of dipole moments of free particles for use in analyzing molecular beams experiments that measure moments by deflection in...
G. E. Ballentine, G. F. Bertsch, N. Onishi, K. Yab...
131
Voted
EC
2008
116views ECommerce» more  EC 2008»
15 years 3 months ago
Efficient Evaluation Functions for Evolving Coordination
Abstract-- This paper presents a method for creating evaluation functions that efficiently promote coordination in a multiagent system, allowing single-agent evolutionary computati...
Adrian K. Agogino, Kagan Tumer
141
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ENGL
2008
78views more  ENGL 2008»
15 years 3 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
127
Voted
BMCBI
2006
141views more  BMCBI 2006»
15 years 3 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte