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EMNLP
2009
14 years 8 months ago
Bayesian Learning of Phrasal Tree-to-String Templates
We examine the problem of overcoming noisy word-level alignments when learning tree-to-string translation rules. Our approach introduces new rules, and reestimates rule probabilit...
Ding Liu, Daniel Gildea
BIBE
2006
IEEE
132views Bioinformatics» more  BIBE 2006»
15 years 5 months ago
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments
Ribonucleic acid (RNA) molecules contain the genetic information that regulates the functions of organisms. Given two different molecules, a preserved function corresponds to a pr...
Rimon Mikhaiel, Guohui Lin, Eleni Stroulia
BMCBI
2006
121views more  BMCBI 2006»
14 years 11 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
JCC
2008
88views more  JCC 2008»
14 years 11 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
BMCBI
2005
306views more  BMCBI 2005»
14 years 11 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...