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» Multiple alignment by aligning alignments
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121
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BMCBI
2008
138views more  BMCBI 2008»
15 years 3 months ago
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote ho
Background: Nonnegative matrix factorization (NMF) is a feature extraction method that has the property of intuitive part-based representation of the original features. This uniqu...
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup...
156
Voted
BMCBI
2008
211views more  BMCBI 2008»
15 years 3 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
125
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USENIX
2008
15 years 5 months ago
A Linux Implementation Validation of Track-Aligned Extents and Track-Aligned RAIDs
Through clean-slate implementation of two storage optimizations--track-aligned extents and track-aligned RAIDs--this paper shows the values of independent validations. The experie...
Jin Qian, Christopher R. Meyers, An-I Andy Wang
110
Voted
APBC
2006
125views Bioinformatics» more  APBC 2006»
15 years 5 months ago
AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment
Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwa...