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» Multiple alignment by sequence annealing
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ISMIR
2004
Springer
119views Music» more  ISMIR 2004»
15 years 3 months ago
Time Series Alignment for Music Information Retrieval
Time series representations are common in MIR applications such as query-by-humming, where a sung query might be represented by a series of ‘notes’ for database retrieval. Whi...
Norman H. Adams, Mark A. Bartsch, Jonah Shifrin, G...
NAR
2008
101views more  NAR 2008»
14 years 9 months ago
PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
We have developed PVS (Protein Variability Server), a web-based tool that uses several variability metrics to compute the absolute site variability in multiple protein-sequence al...
Maria Garcia-Boronat, Carmen M. Diez-Rivero, Ellis...
BMCBI
2007
148views more  BMCBI 2007»
14 years 9 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
GCB
2006
Springer
119views Biometrics» more  GCB 2006»
15 years 1 months ago
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs
: The analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules su...
Axel Mosig, Ivo L. Hofacker, Peter F. Stadler
BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank