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» Multiple grid methods for classical molecular dynamics
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ISMB
1994
13 years 7 months ago
An Efficient Method for Multiple Sequence Alignment
Multiple sequence alignment has been a useful methodin the study of molecular evolution and sequence-structure relationships. This paper presents a newmethodfor multiple sequence ...
Jin Kim, Sakti Pramanik
IROS
2007
IEEE
104views Robotics» more  IROS 2007»
14 years 16 days ago
Energy-field reconstruction for haptic-based molecular docking using energy minimization processes
— This paper presents a new method allowing haptic feedback in molecular docking simulations using a minimization process. These simulations, classically used by the pharmaceutic...
Bruno Daunay, Alain Micaelli, Stephane Régn...
BMCBI
2010
175views more  BMCBI 2010»
13 years 6 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
IPPS
2005
IEEE
13 years 12 months ago
Using Message-Driven Objects to Mask Latency in Grid Computing Applications
One of the attractive features of Grid computing is that resources in geographically distant places can be mobilized to meet computational needs as they arise. A particularly chal...
Gregory A. Koenig, Laxmikant V. Kalé
FGCS
2006
135views more  FGCS 2006»
13 years 6 months ago
Scaling applications to massively parallel machines using Projections performance analysis tool
Some of the most challenging applications to parallelize scalably are the ones that present a relatively small amount of computation per iteration. Multiple interacting performanc...
Laxmikant V. Kalé, Gengbin Zheng, Chee Wai ...