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BMCBI
2006
122views more  BMCBI 2006»
14 years 9 months ago
A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks
Background:Receptors and scaffold proteins possess a number of distinct domains and bind multiple partners. A common problem in modeling signaling systems arises from a combinator...
Holger Conzelmann, Julio Saez-Rodriguez, Thomas Sa...
BMCBI
2010
104views more  BMCBI 2010»
14 years 9 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
WAW
2009
Springer
138views Algorithms» more  WAW 2009»
15 years 4 months ago
Information Theoretic Comparison of Stochastic Graph Models: Some Experiments
The Modularity-Q measure of community structure is known to falsely ascribe community structure to random graphs, at least when it is naively applied. Although Q is motivated by a ...
Kevin J. Lang
CORR
2007
Springer
156views Education» more  CORR 2007»
14 years 9 months ago
Analysis of a Mixed Strategy for Multiple Relay Networks
Abstract— Infrastructure based wireless communications systems as well as ad hoc networks experience a growing importance in present-day telecommunications. An increased density ...
Peter Rost, Gerhard Fettweis
BMCBI
2008
78views more  BMCBI 2008»
14 years 9 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...