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» Multiple sequence alignment by quantum genetic algorithm
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TJS
2002
160views more  TJS 2002»
13 years 5 months ago
Adaptive Optimizing Compilers for the 21st Century
Historically, compilers have operated by applying a fixed set of optimizations in a predetermined order. We call such an ordered list of optimizations a compilation sequence. This...
Keith D. Cooper, Devika Subramanian, Linda Torczon
IPPS
2010
IEEE
13 years 4 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
CCGRID
2003
IEEE
13 years 11 months ago
A Parallel FPT Application For Clusters
Fixed-parameter tractability (FPT) techniques have recently been successful in solving NP-complete problem instances of practical importance which were too large to be solved with...
James Cheetham, Frank K. H. A. Dehne, Andrew Rau-C...
BMCBI
2006
144views more  BMCBI 2006»
13 years 6 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
KDD
2009
ACM
178views Data Mining» more  KDD 2009»
14 years 6 months ago
Constrained optimization for validation-guided conditional random field learning
Conditional random fields(CRFs) are a class of undirected graphical models which have been widely used for classifying and labeling sequence data. The training of CRFs is typicall...
Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E...