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RECOMB
2005
Springer
16 years 1 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
99
Voted
RECOMB
2005
Springer
16 years 1 months ago
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
Background: Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, ...
David Kulp, Manjunatha Jagalur
WABI
2009
Springer
124views Bioinformatics» more  WABI 2009»
15 years 7 months ago
Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction
Background: Functionally related genes tend to be correlated in their expression patterns across multiple conditions and/or tissue-types. Thus co-expression networks are often use...
Matthew Hansen, Logan Everett, Larry Singh, Sridha...
107
Voted
WABI
2009
Springer
127views Bioinformatics» more  WABI 2009»
15 years 7 months ago
Constructing Majority-Rule Supertrees
Background: Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree ...
Jianrong Dong, David Fernández-Baca, Fred R...
CIKM
2009
Springer
15 years 7 months ago
MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge
Background: Since Swanson proposed the Undiscovered Public Knowledge (UPK) model, there have been many approaches to uncover UPK by mining the biomedical literature. These earlier...
Ali Zeeshan Ijaz, Min Song, Doheon Lee