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» Multipolar representation of protein structure
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88
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CORR
2006
Springer
121views Education» more  CORR 2006»
14 years 11 months ago
Number sequence representation of protein structures based on the second derivative of a folded tetrahedron sequence
A protein is a sequence of amino-acids of length typically less than 1, 000, where there are 20 kinds of amino-acids. In nature, each protein is folded into a well-defined three-d...
Naoto Morikawa
105
Voted
BMCBI
2005
119views more  BMCBI 2005»
14 years 11 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
93
Voted
JCC
2008
92views more  JCC 2008»
14 years 11 months ago
Fast procedure for reconstruction of full-atom protein models from reduced representations
: We introduce PULCHRA, a fast and robust method for the reconstruction of full-atom protein models starting from a reduced protein representation. The algorithm is particularly su...
Piotr Rotkiewicz, Jeffrey Skolnick
CORR
2010
Springer
124views Education» more  CORR 2010»
14 years 9 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
106
Voted
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
14 years 9 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...