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IPPS
2009
IEEE
15 years 11 months ago
Long time-scale simulations of in vivo diffusion using GPU hardware
To address the problem of performing long time simulations of biochemical pathways under in vivo cellular conditions, we have developed a lattice-based, reaction-diffusion model t...
Elijah Roberts, John E. Stone, Leonardo Sepulveda,...
IEEEPACT
1998
IEEE
15 years 9 months ago
Efficient Methods for Multi-Dimensional Array Redistribution
In this paper, we present efficient methods for multidimensional array redistribution. Based on the previous work, the basic-cycle calculation technique, we present a basic-block ...
Yeh-Ching Chung, Ching-Hsien Hsu
CC
2010
Springer
190views System Software» more  CC 2010»
15 years 12 months ago
Is Reuse Distance Applicable to Data Locality Analysis on Chip Multiprocessors?
On Chip Multiprocessors (CMP), it is common that multiple cores share certain levels of cache. The sharing increases the contention in cache and memory-to-chip bandwidth, further h...
Yunlian Jiang, Eddy Z. Zhang, Kai Tian, Xipeng She...
HPDC
1993
IEEE
15 years 9 months ago
Supporting Heterogeneity and Distribution in the Numerical Propulsion System
The Numerical Propulsion System Simulation (NPSS) project has been initiated by NASA to explore the use of computer simulation in the development of new aircraft propulsion techno...
Patrick T. Homer, Richard D. Schlichting
HPDC
2010
IEEE
15 years 6 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker