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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 7 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
IPTPS
2005
Springer
15 years 6 months ago
Clustering in P2P Exchanges and Consequences on Performances
— We propose here an analysis of a rich dataset which gives an exhaustive and dynamic view of the exchanges processed in a running eDonkey system. We focus on correlation in term...
Stevens Le-Blond, Jean-Loup Guillaume, Matthieu La...
HPDC
2000
IEEE
15 years 5 months ago
Performance Evaluation of a Firewall-Compliant Globus-based Wide-Area Cluster System
In this paper, we present a performance evaluation of a wide-area cluster system based on a rewallenabled Globus metacomputing toolkit. In order to establish communication links ...
Yoshio Tanaka, Motonori Hirano, Mitsuhisa Sato, Hi...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 10 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
120
Voted
CF
2007
ACM
15 years 4 months ago
An analysis of the effects of miss clustering on the cost of a cache miss
In this paper we describe a new technique, called pipeline spectroscopy, and use it to measure the cost of each cache miss. The cost of a miss is displayed (graphed) as a histogra...
Thomas R. Puzak, Allan Hartstein, Philip G. Emma, ...